Post by abataqwato on May 25, 2019 13:40:28 GMT
Main category: Education
Sub category: Science
Developer: CompOmics
Filesize: 113459
Title: PeptideShaker
lilplil.weebly.com/?jump=aHR0cHM6Ly9tYWNwa2cuaWN1Lz9pZD02MTAyNCZzPWZyZnJtcyZrdz1QZXB0aWRlU2hha2VyKzEuMTYuNDA=
PeptideShaker 1.16.40
matches tandem mass spectra with peptide sequences FEATURE IMPROVEMENT: Improved and extended the PRIDE Export, which now also includes PTM scores, spectrum file names and titles. - There is the possibility to submit two different mass spectral related files for one dataset, as required for several MS imaging data formats (e.g. imzML and Analyze). The mass spectral data file (* for imzML or * file in Analyze format) must be labeled as ‘RAW’. The file that contains metadata (such as pixel dimensions and additional information) must be labeled as ‘MS_IMAGE_DATA’ (e.g. * file for imzML or * file for Analyze). LIBRARY UPDATE: Updated utilities to version 3.45.25. NEW FEATURE: Added peptide level modification QC plots. Components of multiprotein complexes are routinely determined by using proteomic approaches. However, this information lacks functional content except when new complex members are identified. To analyze quantitatively the abundance of proteins in human Mediator we used normalized spectral abundance factors generated from shotgun proteomics data sets. With this approach we define a common core of mammalian Mediator subunits shared by alternative forms that variably associate with the kinase module and RNA polymerase (pol) II. Although each version of affinity-purified Mediator contained some kinase module and RNA pol II, Mediator purified through F-Med26 contained the most RNA pol II and the least kinase module as demonstrated by the normalized spectral abundance factor approach. The distinct forms of Mediator were functionally characterized by using a transcriptional activity assay, where F-Med26 Mediator/RNA pol II was the most active. This method of protein complex visualization has important implications for the analysis of multiprotein complexes and assembly of protein interaction networks. • multidimensional protein identification technology • proteomics • spectrum counting • mass spectrometry
Site:
Updated version macpkg.icu/?id=61024&kw=EXI-VERSION-1.16.42-PEPTIDESHAKER.ZIP (114593 kb)
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Torrent version key
0YTC2-Z96AY-ZGEV6-J15DC
6CV3Y-PC2QQ-V7UV9-00GUO
9TBF1-GCSRW-RH8AM-6RPMB
6ZEU2-1IJ7T-FOP6T-6JD4G
UFXA4-K50FY-FT26X-CTAWN
QMCE5-J531R-0ABUY-3QZIJ
5OQC3-SDQHG-012L9-QVNB1
BUG FIX: Fixed a bug where the processing of the neutral losses could cancel the loading of the data.
BUG FIX: Fixed a bug in the default peptide export where additional empty columns where added messing.
FEATURE IMPROVEMENT: Removed the hardcoded white chart color for selected rows.
FEATURE IMPROVEMENT: Added a remove all filters option in the main PRIDE Reshake window.
BUG FIX: Fixed a bug where the coverage panel had gone missing.
Pyteomics
FEATURE IMPROVEMENT: The loading of search results is now a lot quicker!
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